How to pool fractions


Introduction

Fractions are collected sequentially during a separation. Each fraction contains a set volume of sample. This section describes how to pool the information on several fractions into a new curve.


How to view the contents of a fraction

Each fraction is numbered according to its order in the sequence. The information is saved as a curve under the name Fractions.

  • Select this curve on the Curve tab in the Chromatogram Layout dialog box to display the contents of each fraction in relation to the information displayed on the UV detection curve.


How to pool fractions

The table below describes how to pool fractions.

Step

Action

1

  • Choose Operations:Pool.

Result: UNICORN™ will automatically pool suitable fractions. The pooled fractions are listed in a table below the chromatogram and the pooled peaks are numbered sequentially in the chromatogram.

Note: Only adjacent fractions will be pooled. The fraction numbers for each pool are listed in the table as a range in retention order, e.g. A6-A7 etc.

2

The pooled fractions can be adjusted manually:

To include or exclude adjacent fractions in a pool

  • Click the numbered marker under the pool and drag the sideline.

To add more pools

  • Click between the droplines under a fraction to create a new pool, and drag the sidelines to include more adjacent fractions.

To delete pools

  • Click the numbered marker to select the pool and click the Delete button. Click the Delete All button to clear all pools.

To restore the pools created by UNICORN

  • Click the Default Pool button.

3

Other curves can be selected for the operation:

  • Select another source curve from the Source curve droplist and click the Default Pool button.

or

  • Select another baseline curve from the Baseline droplist and click the Default Pool button.

or

  • Select another fraction curve from the Fraction curve droplist and click the Default Pool button.

Result: The pooled fractions in the list are replaced by the pooled fractions for the selected curve.


How to create a pool fraction curve

The pooled fractions can be stored as a new curve.

Note: You must store the pooled fractions as a new curve in order to be able to proceed with other operations using the pooled fractions.

Step

Action

1

  • Choose Operations:Create Pool Fraction curve.

Result: The Create Pool Fraction Curve dialog box opens.

2

  • Select a position where the curve will be stored from the Save curve in list.

  • If needed, type a new name in the Curve name text box.

Note: The suggested curve name will have the default suffix POOL.

  • Click the OK button.

Result: The Pool Fraction curve is displayed in the chromatogram.


How to show only the pooled fractions

The active chromatogram will now show both the original and the pooled fraction curves. The table below describes how to show only the pooled fractions.

Step

Action

1

  • Choose Edit:Chromatogram Layout.

or

  • Right-click in the chromatogram and choose Properties from the shortcut menu.

Result: The Chromatogram Layout dialog box opens.

2

  • Select the Curve tab.

  • De-select the check box for the original fraction curve (remove the check mark).

Result: The original fraction curve is de-selected and is not displayed.


How to calculate concentration and amount in the pools

Protein concentrations

The protein concentration in the fractions are calculated using the following formula:

Concentration [mg/ml] = A / (d * 1000 *Ext.Coeff.)

A = Average fraction absorbance = Area / Volume [mAu].

d = UV-cell path length [cm]

Ext.Coeff. = Protein coefficient at used wavelength. [l g-1 cm-1]

Protein amounts

The total amount of protein found in the pool fraction is calculated using the following formula:

Amount [mg] = Concentration [mg/ml] * pooled fraction volume [ml]

How to calculate the concentrations and amounts:

  • Type the UV path length expressed in centimeters in the Path Length text box.

  • Type the extiction coefficient in the Ext.Coeff. table cell for each pool.

Result: The sample concentration and amount for each pool is calculated in the corresponding table cell.


How to determine a pool target volume

The Target conc. and Target vol. cells are used to calculate the pool volume at a specific concentration level. The result can then be used to determine if the pool needs to be concentrated further or diluted.

  • Type the desired concentration level (mg/ml) in the Target conc. table cell.

Result: The corresponding target volume is calculated in the Target vol. table cell using the following formula:

Target vol. = Conc. * (Vol./Target conc.)


How to use the Pooling Protocol

A protocol of the pooled fractions can be printed for use when handling the samples. The table below describes how to add pools to the Pooling Protocol and send the list to a printer or export the list to a file.

Step

Action

1

  • Open a result file in the Evaluation module.

  • Pool fractions as described in How to pool fractions above.

  • Click the Add to Pooling Protocol button.

Result: The pooled fractions from the active result file is added to the Pooling Protocol.

2

  • Repeat step 1 to add pooled fractions from other result files.

Note: You will be asked to save the current file when you open the next. The pool table will not be saved.

3

  • Click the View Pooling Protocol button.

Result: The Pooling Protocol dialog box opens.

4

  • Click the Show all fractions checkbox to display the individual fractions instead of fraction ranges for the pools.

  • Click the Show all columns checkbox to display all the information columns from the Pool table.

Possible actions in the Pooling Protocol

To delete a single pool...

  • select a pool and click the Delete button

To clear the whole protocol...

  • click the Delete all button.

To print the protocol on the default Windows™ printer...

  • click the Print button to print the protocol on the default Windows printer.

To export the protocol...

  • click the Export button to save the protocol in one of the following formats:

    text (.txt)

    Excel (.xls)

    HTML (.htm)

    XML (.xml)

Note: The protocol is automatically saved for the user. The pooling protocol will be available again when the user starts UNICORN the next time.

5

  • Click the Close button to close the Pooling Protocol dialog box.

Result: If the protocol was exported or only edited, the dialog box will close. If the protocol was printed, a dialog box will open asking if you want to delete the list and start a new.


2005-06-15